PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G31580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 229aa    MW: 23253.3 Da    PI: 10.7658
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G31580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.74.8e-3930129291
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 
                      a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s +s++++s+++     
  LPERR02G31580.1  30 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSTTAASNASpfilg 123
                      789*************************************************************999998886666666666665555566666 PP

              TCP  89 ...kaa 91 
                         +aa
  LPERR02G31580.1 124 krlRAA 129
                      555222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-3336124IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTRPDGAAA AAAPDKQLVP AAPTTNGALA VRKAPSKDRH SKVDGRGRRI RMPIICAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STSSPSSLRS TTAASNASPF  120
ILGKRLRAAD DSPAPDLAAH PVAPTQGFWA LPARADFGQL WSFAAAPEMM VAAAAAPAMA  180
GEASAARVGN YLPMAQGNLN LLASFSGGPG GAGAAAAAAT GRAEEESAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748354e-91AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954492.11e-91PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX22e-74TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D9VMZ51e-161A0A0D9VMZ5_9ORYZ; Uncharacterized protein
STRINGORGLA02G0333700.14e-86(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-42TCP family protein